M. Langer, L. F. Snyderhan, U. Grossniklaus, and A. Ray. "Transposon excision from an atypical site: A mechanism of evolution of novel transposable elements" PLoS One (in press) (2007) R. J. Perera, and A. Ray. "MicroRNAs in the search for understanding human diseases" J. BioDrugs 21:97-104 (2007) V. Chickarmane, Ray, A., Sauro, H., and Nadim, A. "A model for p53 dynamics triggered by DNA damage" SIAM J. Applied Dynamical Systems 6: 61-78 (2007). M. Baitaluk, M. Sedova, A. Ray and A. Gupta. "BiologicalNetworks: visualization and analysis tool for systems biology" Nucleic Acids Res 34: 466-471 (2006) *R. J. Perera, Marcusson, E.G., Koo, S., Kang, X., Kim, Y., White, N., Dean, N.M. "Identification of novel PPARgamma target genes in primary human adipocytes" Gene. 369: 90-99 (2006)
*Work partially carried out in the Ray laboratory M. Baitaluk, X. Quian, S. Godbole, A. Raval, A. Ray, and A. Gupta. "PathSys: Integrating molecular interaction graphs for systems biology" BMC Bioinformatics 7: 55 (2006)
doi:10.1186/1471-2105-7-55 A. Ray. "RNA cache or genome trash?" Nature 434: 505-509 (2005)
http://www.nature.com/nature/journal/v437/n7055/abs/nature04063.html S. Mlotswa, S. E. Schauer, T. H. Smith, A. Mallory, J. M. Herr, B. Roth, D. Merchant, A. Ray, L. H. Bowman, and V.H. Vance. "Ectopic DICER-LIKE1 expression in P1/HC-Pro Arabidopsis rescues phenotypic anomalies but not defects in microRNA and silencing pathways" Plant Cell 17: 2873-2855 (2005) N. Gupta, A. Law, R. Poddar, M. Louie, A. Ray and D.N. Chakravarti. Toxicoproteomics: Applications in drug development. Current Proteomics 2: 97-102 (2005) A. Law, N. Gupta, M. Louie, R. Poddar, A. Ray and D.N. Chakravarti. Identification and characterization of plant allergens using proteomic approaches. Current Proteomics 2: 147-164 (2005) A. Ray. "Displaced T-loop models and telomere maintenance in plants" Nature Reviews Genetics (2004) doi:10.1038/nrg1207-c3
http://www.nature.com/nrg/journal/v4/n11/corres/nrg1207_fs.html I. Papp, M. F. Mette, W. Aufsatz, L. Daxinger, S. S. Schauer, Animesh Ray, J. van der Winden, M. Matzke, and A. J. M. Matzke. "Evidence for Nuclear Processing of Plant miRNA and 21-22 nt siRNA Precursors" Plant Physiol 132: 1382-1390 (2003) A. Gupta, Y. Yang, A. Bagchi, and A. Ray. "Declarative specification of gene regulatory networks and query evaluation in PathSys" In Proc. 19th International Conference on Data Engineering (2003) S. E. Schauer, S. E. Jacobsen, D. W. Meinke, and A. Ray. "DICER-LIKE1 : Blind men and elephants in Arabidopsis development" Trends in Plant Sci 7: 487-491 (2002) T. Golden, S. E. Schauer, J. D. Lang, S. Pien, A. Mushegian, U. Grossniklaus, D. Meinke, and A. Ray. "SHORT INTEGUMENTS1 / SUSPENSOR1 / CARPEL FACTORY, a Dicer homologue, is a maternal-effect gene required for embryo development in Arabidopsis" Plant Physiol 130: 808-822 (2002) A. Ray and M. Langer. "Homologous recombination: ends as the means" Trends in Plant Sci 7: 435-440 (2002) M. Ogihara and A. Ray. "The minimum-model DNA computation on a sequence of probe arrays" In Proceedings of the 3rd International Conference on Unconventional Models of Computation, UMC 200, Kobe (2002) C. Calude, M. J. Dinneen, F. Peper (Eds.) Published in Lecture Notes in Computer Science vol. 2509, pp. 38-49, Springer Verlag (Heidelberg) M. Ogihara and A. Ray. "DNA Computing on a Chip" Nature 403: 143-145 (2000) |
