Streicher, K., Willmorth, N., Garcia, J., Boerner, J., Dewey, T. G. Ethier, S. "Activation of an NF-Kb/IL-1 Positive Feedback by Amphiregulin in Human Breast Cancer Cells," Mol. Cancer Res. (2007). Chang, P. L., Rinne, A. W. & Dewey, T. G. "Structure alignment based on coding of local geometric measures. BMC Bioinformatics 7, 346 (2006). Wu, X. & Dewey, T.G. “From Microarray to Biological Networks: Analysis of Gene Expression Profiles”. Bioinformatics and Drug Discovery (ed Larson, R.S.) 35-48 (Humana Press, Totowa, NJ, (2006). Jia, Y., Dewey, T.G. A random polymer model of the statistical significance of structure alignment, J. Computational Biol. 12, 298-313 (2005). Tao, Y., Jia, Y.T., Dewey, T.G. “Stochastic fluctuations in gene expression far from equilibrium: omega expansion and linear noise approximation”, J. Chem. Phys. 122, # 124108 (2005). Dewey, T.G., Galas, D.J. “Gene Regulatory Networks”, Power Laws, Scale-Free Networks and Genome Biology, eds. E. Koonin, Y. Wolf and G. Karev, Landes Bioscience Eureka.com, Georgetown, TX (2005). Jia, Y., Dewey, T.G., Shindyalov,I.N., Bourne, P.E. “A New Scoring Function and Associated Statistical Significance for Structure Alignment by CE”, Journal of Computational Biology 11, 787-799 (2004). Chung, F., Dewey, T. G., Liang, L., Galas, D.J., “ Duplication Models and Biological Networks,” J. of Computational Biol. 18, 1486-1493 (2003). Wu, X., Dewey, T.G., “Cluster Analysis of Dynamic Parameters of Gene Expression”, J. Bioinformatics. Comp Bio 1, 447-458 (2003). Dewey, T.G. “Professional masters in the post-genomic era – or why chemists should become systems biologists.” Abstr. Am. Chem. Soc. 225, U719 (2003). Bhan, A., Galas, D.J., Dewey, T.G. “A duplication growth model of gene expression networks”, Bioinformatics 18, 1486-1493 (2002). Dewey, T.G. “From microarrays to networks: mining expression time series”, Drug Discovery Today 7 (Suppl.) 170-175 (2002). Dewey, T. G., Galas, D. J., “Dynamic models of gene expression and classification”, Funct Integr Genomics 1:269-278, (2001) |